Publications

  1. MacManes M.D. and M.B. Eisen (2013) Improving transcriptome assembly through error correction of high-throughput sequence reads. PeerJ 1:e113  
  2. Korf, I., K. Bradham, M. D. MacManes and 89 others 2013 Assemblathon 2: genome assembly in three vertebrate species. GigaScience 2013, 2:10 http://dx.doi.org/10.1186/2047-217X-2-10
  3. Haas, B., A. Papanicolaou, Regev, A, M. D. MacManes and others 2012 De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity. Nature Protocols 8, 1494–1512 
  4. MacManes M.DD. (2013) On the accurate description of social and genetic mating systems. PeerJ PrePrints 1:e10v1
  5. MacManes. M.D. and E.A. Lacey (2012). The social brain: Transcriptome assembly and characterization of the hippocampus from a social subterranean rodent, the tuco-tuco (Ctenomys sociabilis). PLOS ONE 7(9): e45524. http://dx.plos.org/10.1371/journal.pone.0045524
  6. MacManes. M.D. and E.A. Lacey (2012). Is Promiscuity Associated with Enhanced Selection on MHC-DQ? in Mice (genus Peromyscus)? PLOS ONE 7(5): e37562. http://dx.doi.org/10.1371/journal.pone.0037562
  7. MacManes. M.D. (2011). Promiscuity in mice is associated with increased Vaginal Bacterial Diversity. Naturwissenschaften 98: 951–960. http://dx.doi.org/10.1007/s00114-011-0848-2 PMID 21964973 [PDF]
  8. Rowe, K., S. Singhal, M.D. MacManes, J. Ayroles, T.L. Morelli, E.M. Rubridge, K. Bi, and C.C. Moritz. (2011) Museum genomics: Low cost and high accuracy genetic data from historical specimens. Molecular Ecology Resources. http://dx.doi.org/10.1111/j.1755-0998.2011.03052.x  [PDF]
  9. Benedict, L., M. D. MacManes, J. Fuchs and R. C. K. Bowie, 2010 When non-coding is non- neutral: the role of CHD1 gene polymorphism in sexing, in phylogenetics and as a correlate of fitness in birds. Ibis: 1-3.  http://dx.doi.org/10.1111/j.1474-919X.2010.01015.x [PDF]
  10. Quan, Y. F., M. D. MacManes, L. A. Ebensperger, E. A. Lacey and L. D. Hayes, 2009 Isolation and characterization of polymorphic microsatellite loci from Octodon degus. Molecular Ecology Resources: 3.  http://dx.doi.org/10.1111/j.1755-0998.2009.02536.x [PDF]

Page Last updated: 2 August, 2013