Matthew MacManes
Functional and Behavioral Genomics, Peromyscus

pic4

  1. Quan, Y. F., M. D. MacManes, L. A. Ebensperger, E. A. Lacey and L. D. Hayes, 2009 Isolation and characterization of polymorphic microsatellite loci from Octodon degus. Molecular Ecology Resources: 3.  http://dx.doi.org/10.1111/j.1755-0998.2009.02536.x [PDF]
  2. Benedict, L., M. D. MacManes, J. Fuchs and R. C. K. Bowie, 2010 When non-coding is non- neutral: the role of CHD1 gene polymorphism in sexing, in phylogenetics and as a correlate of fitness in birds. Ibis: 1-3.  http://dx.doi.org/10.1111/j.1474-919X.2010.01015.x [PDF]
  3. Rowe, K., S. Singhal, M.D. MacManes, J. Ayroles, T.L. Morelli, E.M. Rubridge, K. Bi, and C.C. Moritz. (2011) Museum genomics: Low cost and high accuracy genetic data from historical specimens. Molecular Ecology Resources. http://dx.doi.org/10.1111/j.1755-0998.2011.03052.x  [PDF]
  4. MacManes. M.D. (2011). Promiscuity in mice is associated with increased Vaginal Bacterial Diversity. Naturwissenschaften 98: 951–960. http://dx.doi.org/10.1007/s00114-011-0848-2 PMID 21964973 [PDF]
  5. MacManes. M.D. and E.A. Lacey (2012). Is Promiscuity Associated with Enhanced Selection on MHC-DQα in Mice (genus Peromyscus)? PLOS ONE 7(5): e37562. http://dx.doi.org/10.1371/journal.pone.0037562
  6. MacManes. M.D. and E.A. Lacey (2012). The social brain: Transcriptome assembly and characterization of the hippocampus from a social subterranean rodent, the tuco-tuco (Ctenomys sociabilis). Accepted. PLoS One
  7. MacManes. M.D. (2012). On the accurate description of social and genetic mating systems. In review. Behavioral Ecology [Pre-print PDF]
  8. M. D. MacManes and E.A. Lacey 2012 Understanding host resistance to pathogens: A genomics approach. In prep. International Journal of Evolutionary Biology
  9. Haas, B., A. Papanicolaou, Regev, A, M. D. MacManes and others 2012 De novo transcript sequence reconstruction: reference generation and analysis with Trinity RNA-Seq. In prep. Nature Protocols