http://macmanes.com/blog Evolutionary Biology, Next-Gen Sequencing, Population Genetics Sun, 09 Oct 2011 16:32:24 +0000 hourly 1 http://wordpress.org/?v=3.2.1 http://macmanes.com/blog/?p=27&cpage=1#comment-17 dan Sun, 09 Oct 2011 16:32:24 +0000 http://macmanes.com/blog/?p=27#comment-17 Hi Matt, thanks for posting this. It looks like you have reported the scaffold stats in a way that ignores the captured gaps/runs of N's within scaffolds. If its not too much of an imposition it would be useful to see the scaffold numbers (or even just the total scaffold lengths) including these gaps, which presumably represent sequences that are linked across but whose sequence is unknown (or found in erroneously unlinked short scaffolds). Hi Matt, thanks for posting this. It looks like you have reported the scaffold stats in a way that ignores the captured gaps/runs of N’s within scaffolds. If its not too much of an imposition it would be useful to see the scaffold numbers (or even just the total scaffold lengths) including these gaps, which presumably represent sequences that are linked across but whose sequence is unknown (or found in erroneously unlinked short scaffolds).

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